miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|158129105|gb|DC523961.1|DC523961 GAGCTTGTCGCTGCGGTGTTGCTGTTGGAGACTCGATTGTTGGTGACAGCGGAAGAACGATAACAAAATGCCGGAGCGAG
ATAGTGAGCCGTTCTCCAACCCTTTGGCCCCCGATGGCCACGATGTGGATGATCCTCACTCCTTCCACCAATCAAAACTC
ACCAATGAAGACTTCAGGAAACTTCTCATGACCCCCANGGCTGCACCTACCTCTGCACCACCTTCTAAGTCACGTCACCA
TGANATGCCAAGGGAGTACAATGAGGATGAANACCCGTCTGCACGAAGGAGGAAAAANAAAAGNNATTATGCCAAGCCTA
CGCCAACACGAAATTGAGAGAGAGANANAGCTAGCAGANNAANTACCGGGCATCGTGNCCACGGAACNNNACAGATNNNN
CTGA




Most similar to sp|Q66HG8|RED_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
          Length = 557

 Score =  136 bits (343), Expect(2) = 7e-33
 Identities = 65/83 (78%), Positives = 66/83 (79%)
 Frame = +2

Query: 68  MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMXXXXXXXXXXXXKSRHHXM 247
           MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLM            KSRHH M
Sbjct: 1   MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM 60

Query: 248 PREYNEDEXPSARRRKXKXXYAK 316
           PREYNEDE P+ARRRK K  YAK
Sbjct: 61  PREYNEDEDPAARRRKKKSYYAK 83



 Score = 23.5 bits (49), Expect(2) = 7e-33
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 294 KXKXIMPSLRQHEIEREXXLA 356
           K K     LRQ EIERE  LA
Sbjct: 76  KKKSYYAKLRQQEIERERELA 96


>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1
          Length = 557

 Score =  136 bits (343), Expect(2) = 7e-33
 Identities = 65/83 (78%), Positives = 66/83 (79%)
 Frame = +2

Query: 68  MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMXXXXXXXXXXXXKSRHHXM 247
           MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLM            KSRHH M
Sbjct: 1   MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM 60

Query: 248 PREYNEDEXPSARRRKXKXXYAK 316
           PREYNEDE P+ARRRK K  YAK
Sbjct: 61  PREYNEDEDPAARRRKKKSYYAK 83



 Score = 23.5 bits (49), Expect(2) = 7e-33
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 294 KXKXIMPSLRQHEIEREXXLA 356
           K K     LRQ EIERE  LA
Sbjct: 76  KKKSYYAKLRQQEIERERELA 96


>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=3
          Length = 557

 Score =  136 bits (343), Expect(2) = 7e-33
 Identities = 65/83 (78%), Positives = 66/83 (79%)
 Frame = +2

Query: 68  MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMXXXXXXXXXXXXKSRHHXM 247
           MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLM            KSRHH M
Sbjct: 1   MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM 60

Query: 248 PREYNEDEXPSARRRKXKXXYAK 316
           PREYNEDE P+ARRRK K  YAK
Sbjct: 61  PREYNEDEDPAARRRKKKSYYAK 83



 Score = 23.5 bits (49), Expect(2) = 7e-33
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 294 KXKXIMPSLRQHEIEREXXLA 356
           K K     LRQ EIERE  LA
Sbjct: 76  KKKSYYAKLRQQEIERERELA 96


>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=1
          Length = 557

 Score =  136 bits (343), Expect = 4e-32
 Identities = 65/83 (78%), Positives = 66/83 (79%)
 Frame = +2

Query: 68  MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMXXXXXXXXXXXXKSRHHXM 247
           MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLM            KSRHH M
Sbjct: 1   MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEM 60

Query: 248 PREYNEDEXPSARRRKXKXXYAK 316
           PREYNEDE P+ARRRK K  YAK
Sbjct: 61  PREYNEDEDPAARRRKKKSYYAK 83